giovannellilab /Geomosaic
Geomosaic: a flexible bioinformatics platform integrating complementary metagenomic analyses from sequencing reads to genomes
★ — · Updated unknown · Licence unknown
sRNAMap: a lightweight, browser-based web application for small RNA mapping, analysis and visualisation
The paper or list names a code repository. The repository itself was not opened.
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giovannellilab /Geomosaic
Geomosaic: a flexible bioinformatics platform integrating complementary metagenomic analyses from sequencing reads to genomes
★ — · Updated unknown · Licence unknown
EBI-Metagenomics /MAP
MAP: a comprehensive pipeline for mobilome annotation and cargo gene characterisation in prokaryotic (meta)genomic assemblies
★ — · Updated unknown · Licence unknown
alexdobin /STAR
RNA-seq alignment
★ 2.3k · Updated 1y ago · MIT
pachterlab /gget
Genomic reference database querying
★ 1.2k · Updated 5w ago · BSD-2
pachterlab /kallisto
RNA-seq quantification
★ 772 · Updated 3mo ago · BSD-2
zqfang /GSEApy
Gene set enrichment analysis
★ 710 · Updated 8w ago · BSD-3